PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn257961
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 202aa    MW: 22220.9 Da    PI: 4.6895
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn257961genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.54.6e-3871071100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrr+C++dCv+apyf+ ++ +++fa+vhk+FGasnv+kll+ lp + r++a+ s+ yeA ar++dPvyG+v++il+lqq+++ l++e+++++
  Achn257961   7 SCGACKFLRRRCTSDCVFAPYFCYDEaAAHFAAVHKVFGASNVSKLLSYLPVHSRSEAAISMSYEALARMQDPVYGCVAHILALQQEVAYLQEEIETIE 105
                 6***********************9868*******************************************************************9998 PP

      DUF260  99 ee 100
                 ++
  Achn257961 106 NQ 107
                 87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6596108IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MIGIGSSCGA CKFLRRRCTS DCVFAPYFCY DEAAAHFAAV HKVFGASNVS KLLSYLPVHS  60
RSEAAISMSY EALARMQDPV YGCVAHILAL QQEVAYLQEE IETIENQMAN LAADASSFGS  120
SQSTSQHDEM NVQAYRSAET LLFPHEVNAS ANHAVYTQMN TQLPTVFELE DQTSVVSSNS  180
IPLERLFEGI DHQIFASYPW M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277994.18e-88PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS82e-53LBD33_ARATH; LOB domain-containing protein 33
TrEMBLD7TLQ39e-88D7TLQ3_VITVI; Putative uncharacterized protein
STRINGVIT_13s0019g02060.t013e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127691521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-43LOB domain-containing protein 33